PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G123400.1
Common NameB456_008G123400, LOC105762439
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 250aa    MW: 28357.3 Da    PI: 4.6531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G123400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-2068117255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +grW+AeIrdp++   r+r++lg+++taeeAa  +++a+ +++g
  Gorai.008G123400.1  68 KYRGVRRRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIRIKG 117
                         8********.**********965...4***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.84168125IPR001471AP2/ERF domain
SMARTSM003802.8E-3668131IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2268124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-3068125IPR001471AP2/ERF domain
PfamPF008472.4E-1468117IPR001471AP2/ERF domain
CDDcd000188.03E-3468124No hitNo description
PRINTSPR003676.0E-116980IPR001471AP2/ERF domain
PRINTSPR003676.0E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MESNAKASRI VKVRVTDGDA TDSSSSEKPE HRRAKRNVNE IRVEDCKSNL SSMRSKKQQQ  60
QCLSNGVKYR GVRRRPWGRW AAEIRDPTSR TRVWLGTYDT AEEAALVYDR AAIRIKGPNA  120
VTNFVKPPST LEIELETVSE YHSSQESQSL SSPTSVLRFR ANEETELQIE SEDNSHADQV  180
PKDAGNLSDE YLLADCGLCD YFNNDNPAPI FFEQMMLPED NIFEQDRVDI SIKLDVDFGS  240
CTWDVDNYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2164124162ATERF1
3gcc_A4e-2164124162ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435697.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotO823391e-50CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLA0A0D2U2090.0A0A0D2U209_G
STRINGPOPTR_0002s16900.15e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.19e-43cytokinin response factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]